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Algorithm can predict possible Alzheimer’s with nearly 100 per cent accuracy

Researchers from Kaunas universities in Lithuania developed a deep learning-based method that can predict the possible onset of Alzheimer’s disease from brain images with an accuracy of over 99 per cent. The method was developed while analysing functional MRI images obtained from 138 subjects and performed better in terms of accuracy, sensitivity and specificity than previously developed methods.

According to World Health Organisation, Alzheimer’s disease is the most frequent cause of dementia, contributing to up to 70 per cent of dementia cases. Worldwide, approximately 24 million people are affected, and this number is expected to double every 20 years. Owing to societal ageing, the disease will become a costly public health burden in the years to come.

“Medical professionals all over the world attempt to raise awareness of an early Alzheimer’s diagnosis, which provides the affected with a better chance of benefiting from treatment. This was one of the most important issues for choosing a topic for Modupe Odusami, a PhD student from Nigeria”, says Rytis Maskeliūnas, a researcher at the Department of Multimedia Engineering, Faculty of Informatics, Kaunas University of Technology (KTU), Odusami’s PhD supervisor.

Image processing delegated to the machine

One of the possible Alzheimer’s first signs is mild cognitive impairment (MCI), which is the stage between the expected cognitive decline of normal ageing and dementia. Based on the previous research, functional magnetic resonance imaging (fMRI) can be used to identify the regions in the brain which can be associated with the onset of Alzheimer’s disease, according to Maskeliūnas. The earliest stages of MCI often have almost no clear symptoms, but in quite a few cases can be detected by neuroimaging.

However, although theoretically possible, manual analysing of fMRI images attempting to identify the changes associated with Alzheimer’s not only requires specific knowledge but is also time-consuming – application of Deep learning and other AI methods can speed this up by a significant time margin. Finding MCI features does not necessarily mean the presence of illness, as it can also be a symptom of other related diseases, but it is more of an indicator and possible helper to steer toward an evaluation by a medical professional.

“Modern signal processing allows delegating the image processing to the machine, which can complete it faster and accurately enough. Of course, we don’t dare to suggest that a medical professional should ever rely on any algorithm one-hundred-per cent. Think of a machine as a robot capable of doing the most tedious task of sorting the data and searching for features. In this scenario, after the computer algorithm selects potentially affected cases, the specialist can look into them more closely, and at the end, everybody benefits as the diagnosis and the treatment reaches the patient much faster”, says Maskeliūnas, who supervised the team working on the model.

We need to make the most of data

The deep learning-based model was developed as a fruitful collaboration of leading Lithuanian researchers in the Artificial Intelligence sector, using a modification of well-known fine-tuned ResNet 18 (residual neural network) to classify functional MRI images obtained from 138 subjects. The images fell into six different categories: from healthy through the spectre of mild cognitive impairment (MCI) to Alzheimer’s disease. In total, 51,443 and 27,310 images from The Alzheimer’s Disease Neuroimaging Initiative fMRI dataset were selected for training and validation.

The model was able to effectively find the MCI features in the given dataset, achieving the best classification accuracy of 99.99%, 99.95%, and 99.95% for early MCI vs. AD, late MCI vs. AD, and MCI vs. early MCI, respectively.

“Although this was not the first attempt to diagnose the early onset of Alzheimer’s from similar data, our main breakthrough is the accuracy of the algorithm. Obviously, such high numbers are not indicators of true real-life performance, but we’re working with medical institutions to get more data”, says Maskeliūnas.

According to him, the algorithm could be developed into software, which would analyse the collected data from vulnerable groups (those over 65, having a history of brain injury, high blood pressure, etc.) and notify the medical personnel about the anomalies related to the early onset of Alzheimer’s.

“We need to make the most of data”, says Maskeliūnas, “that’s why our research group focuses on the European open science principle, so anyone can use our knowledge and develop it further. I believe that this principle contributes greatly to societal advancement”.

Maskeliūnas, the chief researcher, whose main area focuses on the application of modern methods of artificial intelligence on signal processing and multimodal interfaces, says that the above-described model can be integrated into a more complex system, analysing several different parameters, for example, also monitoring eye movements’ tracking, face reading, voice analysing, etc. Such technology could then be used for self-check and alert to seek professional advice if anything is causing concern.

“Technologies can make medicine more accessible and cheaper. Although they will never (or at least not soon) truly replace the medical professional, technologies can encourage seeking timely diagnosis and help”, says Maskeliūnas.

Meet John Boaz Lee, machine learning researcher1) What do you do?I am a machine learning and data miMeet John Boaz Lee, machine learning researcher1) What do you do?I am a machine learning and data mi

MeetJohn Boaz Lee, machine learning researcher

1) What do you do?

I am a machine learning and data mining researcher. My main area of research is in the intersection of graphs and deep learning. Many different things can be represented mathematically as graphs. For instance, we can represent molecules as graphs — the nodes in a graph are atoms and the edges represent bonds between these atoms. 

A functional MRI scan of the brain can also be modeled as a graph where regions in the brain are denoted by nodes and edges represent a correlation in the activity between the corresponding regions. Given these graphs, we can begin to ask a lot of interesting questions. For instance, what subgraph patterns tend to surface in the brain networks of people suffering from Alzheimer’s that are atypical of healthy brain networks.

2) Where do you work?

I am a Research Scientist at Facebook where I do more applied research. More recently, my work fall in the areas of graph representation learning and temporal sequence modeling.

3) Tell us about the photos!

[Left:] My dissertation defense for my Ph.D. in Computer Science at Worcester Polytechnic Institute (WPI).

[Right:] At the top of Pemetic Mountain at Acadia National Park. Acadia is one of the National Parks in the Northeast USA where I went to grad school.

4.) Tell us about your academic career path so far.

I went to high school in Cebu at Philippine Christian Gospel School. I then went to Dumaguete for my Undergrad at Silliman University; moved to Manila for my Masters at UP Diliman; finally, I flew to Massachusetts to do my PhD at Worcester Polytechnic Institute.

If the probability of getting a good thesis advisor is 0.25, I’d say I’m pretty blessed to have gotten outstanding advisors every single time (P = 0.25 x 0.25 x 0.25 = 0.016). A shoutout to my wonderful academic mentors: Dr. Dave Marcial (SU), Dr. Henry Adorna (UPD), and Dr. Xiangnan Kong (WPI).

5.) Anything else you’d like to share.

If you’re like the majority of Filipinos, paying for a PhD abroad is out of the question — I certainly didn’t have the money to pay for even a single year of grad school in the US. Luckily, in Computer Science, acceptance into a grad school typically comes with a TAship or RAship offer (what this means: tuition is waived, full medical insurance, and a monthly stipend). Read more on how to apply to a graduate school here!


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