#genetics
The cells in our bodies can divide as often as once every 24 hours, creating a new, identical copy. DNA binding proteins called transcription factors are required for maintaining cell identity. They ensure that daughter cells have the same function as their mother cell, so that for example muscle cells can contract or pancreatic cells can produce insulin. However, each time a cell divides the specific binding pattern of the transcription factors is erased and has to be restored in both mother and daughter cells. Previously it was unknown how this process works, but now scientists at Karolinska Institutet have discovered the importance of particular protein rings encircling the DNA and how these function as the cell’s memory.
The DNA in human cells is translated into a multitude of proteins required for a cell to function. When, where and how proteins are expressed is determined by regulatory DNA sequences and a group of proteins, known as transcription factors, that bind to these DNA sequences. Each cell type can be distinguished based on its transcription factors, and a cell can in certain cases be directly converted from one type to another, simply by changing the expression of one or more transcription factors. It is critical that the pattern of transcription factor binding in the genome be maintained. During each cell division, the transcription factors are removed from DNA and must find their way back to the right spot after the cell has divided. Despite many years of intense research, no general mechanism has been discovered which would explain how this is achieved.
“The problem is that there is so much DNA in a cell that it would be impossible for the transcription factors to find their way back within a reasonable time frame. But now we have found a possible mechanism for how this cellular memory works, and how it helps the cell remember the order that existed before the cell divided, helping the transcription factors find their correct places”, explains Jussi Taipale, professor at Karolinska Institutet and the University of Helsinki, and head of the research team behind the discovery.
The results are now being published in the scientific journal Cell. The research group has produced the most complete map yet of transcription factors in a cell. They found that a large protein complex called cohesin is positioned as a ring around the two DNA strands that are formed when a cell divides, marking virtually all the places on the DNA where transcription factors were bound. Cohesin encircles the DNA strand as a ring does around a piece of string, and the protein complexes that replicate DNA can pass through the ring without displacing it. Since the two new DNA strands are caught in the ring, only one cohesin is needed to mark the two, thereby helping the transcription factors to find their original binding region on both DNA strands.
“More research is needed before we can be sure, but so far all experiments support our model,” says Martin Enge, assistant professor at Karolinska Institutet.
Transcription factors play a pivotal role in many illnesses, including cancer as well as many hereditary diseases. The discovery that virtually all regulatory DNA sequences bind to cohesin may also end up having more direct consequences for patients with cancer or hereditary diseases. Cohesin would function as an indicator of which DNA sequences might contain disease-causing mutations.
“Currently we analyse DNA sequences that are directly located in genes, which constitute about three per cent of the genome. However, most mutations that have been shown to cause cancer are located outside of genes. We cannot analyse these in a reliable manner - the genome is simply too large. By only analysing DNA sequences that bind to cohesin, roughly one per cent of the genome, it would allow us to analyse an individual’s mutations and make it much easier to conduct studies to identify novel harmful mutations,” Martin Enge concludes.
The active ingredient in an over-the-counter skin cream might do more than prevent wrinkles. Scientists have discovered that the drug, called kinetin, also slows or stops the effects of Parkinson’s disease on brain cells.
Scientists identified the link through biochemical and cellular studies, but the research team is now testing the drug in animal models of Parkinson’s. The research is published in the August 15, 2013 issue of the journal Cell.
“Kinetin is a great molecule to pursue because it’s already sold in drugstores as a topical anti-wrinkle cream,” says HHMI investigator Kevan Shokat of the University of California, San Francisco. “So it’s a drug we know has been in people and is safe.”
Parkinson’s disease is a degenerative disease that causes the death of neurons in the brain. Initially, the disease affects one’s movement and causes tremors, difficulty walking, and slurred speech. Later stages of the disease can cause dementia and broader health problems. In 2004, researchers studying an Italian family with a high prevalence of early-onset Parkinson’s disease discovered mutations in a protein called PINK1 associated with the inherited form of the disease.
Since then, studies have shown that PINK1 normally wedges into the membrane of damaged mitochondria inside cells that causes another protein, Parkin, to be recruited to the mitochondria, which are organelles responsible for energy generation. Neurons require high levels of energy production, therefore when mitochondrial damage occurs, it can lead to neuronal death. However, when Parkin is present on damaged mitochondria, studding the mitochondrial surface, the cell is able to survive the damage. In people who inherit mutations in PINK1, however, Parkin is never recruited to the organelles, leading to more frequent neuronal death than usual.
Shokat and his colleagues wanted to develop a way to turn on or crank up PINK1 activity, therefore preventing an excess of cell death, in those with inherited Parkinson’s disease. But turning on activity of a mutant enzyme is typically more difficult than blocking activity of an overactive version.
“When we started this project, we really thought that there would be no conceivable way to make something that directly turns on the enzyme,” says Shokat. “For any enzyme we know that causes a disease, we have ways to make inhibitors but no real ways to turn up activity.”
His team expected it would have to find a less direct way to mimic the activity of PINK1 and recruit Parkin. In the hopes of more fully understanding how PINK1 works, they began investigating how PINK1 binds to ATP, the energy molecule that normally turns it on. In one test, instead of adding ATP to the enzymes, they added different ATP analogues, versions of ATP with altered chemical groups that slightly change its shape. Scientists typically must engineer new versions of proteins to be able to accept these analogs, since they don’t fit into the typical ATP binding site. But to Shokat’s surprise, one of the analogs—kinetin triphosphate, or KTP—turned on the activity of not only normal PINK1, but also the mutated version, which doesn’t bind ATP.
“This drug does something that chemically we just never thought was possible,” says Shokat. “But it goes to show that if you find the right key for the right lock, you’ll be able to open the door.”
To test whether the binding of KTP to PINK1 led to the same consequences as the usual ATP binding, Shokat’s group measured the activity of PINK1 directly, as well as the downstream consequences of this activity, including the amount of Parkin recruited to the mitochondrial surface, and the levels of cell death. Adding the precursor of KTP, kinetin, to cells—both those with PINK1 mutations and those with normal physiology—amplified the activity of PINK1, increased the level of Parkin on damaged mitochondria, and decreased levels of neuron death, they found.
“What we have here is a case where the molecular target has been shown to be important to Parkinson’s in human genetic studies,” says Shokat. “And now we have a drug that specifically acts on this target and reverses the cellular causes of the disease.”
The similar results in cells with and without PINK1 mutations suggest that kinetin, which is a precursor to KTP, could be used to treat not only Parkinson’s patients with a known PINK1 mutation, but to slow progression of the disease in those without a family history by decreasing cell death.
Shokat is now performing experiments on the effects of kinetin in mice with various forms of Parkinson’s disease. However, the usefulness of animal models in Parkinson’s research has been debated, and therefore the positive results from the cellular data, he says, is as good an indicator as results in animals that this drug has potential to treat Parkinson’s in humans. Initial human studies will likely focus on the small population of patients with PINK1 mutations, and if successful in that group the drug could later be tested in a wider array of Parkinson’s patients.
This is an elaboration of this post.gilivhan does a pretty good job of explaining things, but I noticed an error in generation two (regarding the law of independent assortment), so, as a biology major, I thought I could help with this.
I’m warning you, do not venture forth lightly. This is a verylong post.
Be part of an important study on the genetics of sexual orientation
Have you had your DNA analyzed by 23andMe or Ancestry?
Are you 18 years or older?
If you answered YES to these questions, you are eligible to participate in a study on sexual orientation.
The purpose of this research study is to understand how genetics may influence people’s personalities and sexual orientation. If you take part in this online study, we will instruct you how to find your genetic data file on your 23andMe account and upload it to our secure website. We will also ask you to complete a series of questionnaires on your personality and sexual behavior.
Time required to complete the study should be about 15-25 minutes.
Anyone 18 years or older who has been sexually active and has had a 23andMe or Ancestry analysis is eligible to participate, regardless of sexual orientation.
Please follow this link to begin the study:
https://pennstate.qualtrics.com/SE/?SID=SV_e5Vi2kF7dFeGGr3
This study is being conducted by the Department of Anthropology at Penn State University, 409 Carpenter Building, University Park, PA.
Please contact the study coordinator Heather Self ([email protected]) or the principal investigator David Puts ([email protected]) for further information.
Be part of an important study on the genetics of sexual orientation
· Have you had your DNA analyzed by 23andMe or Ancestry?
· Are you 18 years or older?
If you answered YES to these questions, you are eligible to participate in a study on sexual orientation.
The purpose of this research study is to understand how genetics may influence people’s personalities and sexual orientation. If you take part in this online study, we will instruct you how to find your genetic data file on your 23andMe account and upload it to our secure website. We will also ask you to complete a series of questionnaires on your personality and sexual behavior.
Time required to complete the study should be about 15-25 minutes.
Anyone 18 years or older who has been sexually active and has had a 23andMe or Ancestry analysis is eligible to participate, regardless of sexual orientation.
Please follow this link to begin the study:
https://pennstate.qualtrics.com/SE/?SID=SV_e5Vi2kF7dFeGGr3
This study is being conducted by the Department of Anthropology at Penn State University, 409 Carpenter Building, University Park, PA.
Please contact the study coordinator Heather Self ([email protected]) or the principal investigator David Puts ([email protected]) for further information.
Be part of an important study on the genetics of sexual orientation
· Have you had your DNA analyzed by 23andMe or Ancestry?
· Are you 18 years or older?
If you answered YES to these questions, you are eligible to participate in a study on sexual orientation.
The purpose of this research study is to understand how genetics may influence people’s personalities and sexual orientation. If you take part in this online study, we will instruct you how to find your genetic data file on your 23andMe account and upload it to our secure website. We will also ask you to complete a series of questionnaires on your personality and sexual behavior.
Time required to complete the study should be about 15-25 minutes.
Anyone 18 years or older who has been sexually active and has had a 23andMe or Ancestry analysis is eligible to participate, regardless of sexual orientation.
Please follow this link to begin the study:
https://pennstate.qualtrics.com/SE/?SID=SV_e5Vi2kF7dFeGGr3
This study is being conducted by the Department of Anthropology at Penn State University, 409 Carpenter Building, University Park, PA.
Please contact the study coordinator Heather Self ([email protected]) or the principal investigator David Puts ([email protected]) for further information.
Be part of an important study on the genetics of sexual orientation
· Have you had your DNA analyzed by 23andMe or Ancestry?
· Are you 18 years or older?
If you answered YES to these questions, you are eligible to participate in a study on sexual orientation.
The purpose of this research study is to understand how genetics may influence people’s personalities and sexual orientation. If you take part in this online study, we will instruct you how to find your genetic data file on your 23andMe account and upload it to our secure website. We will also ask you to complete a series of questionnaires on your personality and sexual behavior.
Time required to complete the study should be about 15-25 minutes.
Anyone 18 years or older who has been sexually active and has had a 23andMe or Ancestry analysis is eligible to participate, regardless of sexual orientation.
Please follow this link to begin the study:
https://pennstate.qualtrics.com/SE/?SID=SV_e5Vi2kF7dFeGGr3
This study is being conducted by the Department of Anthropology at Penn State University, 409 Carpenter Building, University Park, PA.
Please contact the study coordinator Heather Self ([email protected]) or the principal investigator David Puts ([email protected]) for further information.
Be part of an important study on the genetics of sexual orientation
· Have you had your DNA analyzed by 23andMe or Ancestry?
· Are you 18 years or older?
If you answered YES to these questions, you are eligible to participate in a study on sexual orientation.
The purpose of this research study is to understand how genetics may influence people’s personalities and sexual orientation. If you take part in this online study, we will instruct you how to find your genetic data file on your 23andMe account and upload it to our secure website. We will also ask you to complete a series of questionnaires on your personality and sexual behavior.
Time required to complete the study should be about 15-25 minutes.
Anyone 18 years or older who has been sexually active and has had a 23andMe or Ancestry analysis is eligible to participate, regardless of sexual orientation.
Please follow this link to begin the study:
https://pennstate.qualtrics.com/SE/?SID=SV_e5Vi2kF7dFeGGr3
This study is being conducted by the Department of Anthropology at Penn State University, 409 Carpenter Building, University Park, PA.
Please contact the study coordinator Heather Self ([email protected]) or the principal investigator David Puts ([email protected]) for further information.
Bolivar Trask makes his first appearance in the movie
Me: Achondroplasia!
A: He’s a great actor
Me: I know, but I hope you remember what gene it’s on.
A: Oh gosh, stop it.
Trask mentions the Mutant X gene
Me: I wonder if that’s on the X chromosome?
A: Hmm.
Me: I should research this. Maybe I’ll write a paper on the genetics of all this.